# Supplementary Material (ESI) for ChemComm # This journal is © The Royal Society of Chemistry 2000 # CCDC Number: 182/1663 data_sxd1 _audit_creation_method SHELXL-97 _publ_contact_author_name 'Dr. Thomas Steiner' _publ_contact_author_address ; Institut f\"ur Chemie - Kristallographie Freie Universit\"at Berlin Takustra\sse 6 D-14195 Berlin Germany ; _publ_contact_author_email steiner@chemie.fu-berlin.de _publ_contact_letter ; Please consider this CIF as a supplement to submission B001179G for Chem.Commun. ; _publ_requested_journal 'Chem. Commun.' _publ_section_title ; Neutron diffraction study of a very short O-H...n hydrogen bond: crystalline adduct of 2-methylpyridine and pentachlorophenol ; loop_ _publ_author_name _publ_author_address 'Steiner, Thomas' ; Institut f\"ur Chemie - Kristallographie Freie Universit\"at Berlin Takustr. 6 D-14195 Berlin Germany ; 'Wilson, Chick C.' ; ISIS Rutherford-Appleton Laboratory Chilton, UK ; 'Majerz, Irena' ; Institute of Chemistry University of Wroclaw Poland ; _chemical_name_systematic ; 2-methylpyridine pentachlorophenol ; _chemical_name_common ? _chemical_melting_point ? _chemical_formula_moiety ? _chemical_formula_sum 'C12 H8 Cl5 N O' _chemical_formula_weight 359.47 _symmetry_cell_setting triclinic _symmetry_space_group_name_H-M 'P -1' loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' _cell_length_a 9.276(5) _cell_length_b 11.668(6) _cell_length_c 6.849(4) _cell_angle_alpha 104.61(3) _cell_angle_beta 105.06(3) _cell_angle_gamma 99.87(3) _cell_volume 670.0(6) _cell_formula_units_Z 2 _cell_measurement_temperature 30(1) _cell_measurement_reflns_used 25 _cell_measurement_theta_min ? _cell_measurement_theta_max ? _exptl_crystal_description 'flat plate' _exptl_crystal_colour colourless _exptl_crystal_size_max 2.5 _exptl_crystal_size_mid 2.0 _exptl_crystal_size_min 1.0 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.782 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 22.58 _exptl_absorpt_coefficient_mu '1.450, at 1 Angstrom' _exptl_absorpt_correction_type empirical _exptl_absorpt_correction_T_min 0.49 _exptl_absorpt_correction_T_max 0.89 _exptl_absorpt_process_details ; The linear absorption coefficient is wavelength dependent and it is calculated as: mu = 0.49 + 0.96 * lambda [cm^-1] ; _exptl_special_details ; For peak integration a local UB matrix refined for each frame, using approximately 25 reflections. Hence _cell_measurement_reflns_used 25 For final cell dimensions an average of all local cells was performed and estimated standard uncertainties were obtained from the spread of the local observations Because of the nature of the experiment, it is not possible to give values of theta_min and theta_max for the cell determination. Instead, we can give values of _cell_measurement_sin(theta)/lambda_min 0.23 _cell_measurement_sin(theta)/lambda_max 1.04 The same applies for the wavelength used for the experiment. The range of wavelengths used was 0.5-5.0 Angstroms, BUT the bulk of the diffraction information is obtained from wavelengths in the range 0.7-2.5 Angstroms. The data collection procedures on the SXD instrument used for the single crystal neutron data collection are most recently summarised in the Appendix to the following paper Wilson, C.C. (1997). J. Mol. Struct. 405, 207-217. ; _diffrn_ambient_temperature 30(1) _diffrn_radiation_wavelength 0.5-5.0 _diffrn_radiation_type neutron _diffrn_radiation_source 'ISIS spallation source' _diffrn_radiation_monochromator none _diffrn_measurement_device_type SXD _diffrn_measurement_method 'time-of-flight LAUE diffraction' _diffrn_standards_number ? _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% ? _diffrn_reflns_number 12790 _diffrn_reflns_av_R_equivalents 0.076 _diffrn_reflns_av_sigmaI/netI 0.043 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_h_max 27 _diffrn_reflns_limit_k_min -35 _diffrn_reflns_limit_k_max 32 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_theta_min ? _diffrn_reflns_theta_max ? _reflns_number_total 4303 _reflns_number_gt 4303 _reflns_threshold_expression >2sigma(I) _computing_data_collection ? _computing_cell_refinement ? _computing_data_reduction ? _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_molecular_graphics ? _computing_publication_material ? _refine_special_details ; The variable wavelength nature of the data collection procedure means that sensible values of _diffrn_reflns_theta_min & _diffrn_reflns_theta_max cannot be given It is also difficult to estimate realistic values of maximum sin(theta)/lambda values for two reasons: (i) Different sin(theta)/lambda ranges are accessed in different parts of the detectors (ii) The nature of the data collection occasionally allows some reflections at very high sin(theta)/lambda to be observed even when no real attempt has been made to measure data in this region. However, we can attempt to estimate the sin(theta)/lambda limits as follows: _diffrn_reflns_sin(theta)/lambda_min 0.10 _diffrn_reflns_sin(theta)/lambda_max 1.28 Note also that reflections for which the standard profile fitting integration procedure fails are excluded from the data set, thus resulting in a high elimination rate of very weak or "unobserved" peaks from the final data set. The extinction coefficient reported in _refine_ls_extinction_coef is in this case the refined value of the mosaic spread in units of 10^-4 rad^-1 The reference for the extinction method used is: Becker, P. & Coppens, P. (1974). Acta Cryst. A30, 129-148. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1277P)^2^+30.3892P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment mixed _refine_ls_extinction_method 'Becker-Coppens Lorentzian model' _refine_ls_extinction_coef 0.160 _refine_ls_extinction_expression 'Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^' _refine_ls_number_reflns 4303 _refine_ls_number_parameters 245 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0735 _refine_ls_R_factor_gt 0.0735 _refine_ls_wR_factor_ref 0.1830 _refine_ls_wR_factor_gt 0.1830 _refine_ls_goodness_of_fit_ref 1.023 _refine_ls_restrained_S_all 1.023 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group O O 0.7591(3) 0.3060(2) -0.0110(5) 0.0078(4) Uani 1 1 d . . . Cl2 Cl 0.87747(14) 0.09155(13) -0.0886(3) 0.0062(2) Uani 1 1 d . . . Cl3 Cl 0.62594(16) -0.15390(12) -0.2979(3) 0.0063(2) Uani 1 1 d . . . Cl4 Cl 0.27727(15) -0.15388(12) -0.3993(3) 0.0066(2) Uani 1 1 d . . . Cl5 Cl 0.18460(15) 0.09311(13) -0.2960(3) 0.0072(3) Uani 1 1 d . . . Cl6 Cl 0.43963(15) 0.33901(12) -0.1023(3) 0.0072(3) Uani 1 1 d . . . C1 C 0.6473(2) 0.20417(17) -0.0958(4) 0.0050(3) Uani 1 1 d . . . C2 C 0.6859(2) 0.09148(16) -0.1464(4) 0.0051(3) Uani 1 1 d . . . C3 C 0.5727(2) -0.01900(16) -0.2383(4) 0.0043(3) Uani 1 1 d . . . C4 C 0.41698(19) -0.01890(16) -0.2838(4) 0.0045(3) Uani 1 1 d . . . C5 C 0.3762(2) 0.09234(17) -0.2387(4) 0.0045(3) Uani 1 1 d . . . C6 C 0.4896(2) 0.20154(17) -0.1457(4) 0.0048(3) Uani 1 1 d . . . N1' N 0.76151(15) 0.47509(12) 0.3186(3) 0.0070(2) Uani 1 1 d . . . C2' C 0.8698(2) 0.58109(17) 0.3866(3) 0.0057(3) Uani 1 1 d . . . C3' C 0.8983(2) 0.66520(18) 0.5856(4) 0.0079(4) Uani 1 1 d . . . C4' C 0.8140(2) 0.6382(2) 0.7162(4) 0.0078(4) Uani 1 1 d . . . C5' C 0.7003(2) 0.5285(2) 0.6427(4) 0.0091(4) Uani 1 1 d . . . C6' C 0.6793(2) 0.4501(2) 0.4437(4) 0.0091(4) Uani 1 1 d . . . C7' C 0.9581(2) 0.6046(2) 0.2391(4) 0.0087(4) Uani 1 1 d . . . H H 0.7461(7) 0.3763(6) 0.1127(13) 0.0211(13) Uani 1 1 d . . . H3' H 0.9869(8) 0.7496(6) 0.6351(14) 0.0239(14) Uani 1 1 d . . . H4' H 0.8356(9) 0.7012(7) 0.8729(12) 0.0260(16) Uani 1 1 d . . . H5' H 0.6331(9) 0.5051(8) 0.7415(14) 0.0253(15) Uani 1 1 d . . . H6' H 0.5928(8) 0.3640(6) 0.3772(14) 0.0256(16) Uani 1 1 d . . . H71' H 0.9744(14) 0.6978(9) 0.238(2) 0.042(3) Uani 1 1 d . . . H72' H 0.8990(10) 0.5455(10) 0.0757(12) 0.0313(19) Uani 1 1 d . . . H73' H 1.0715(10) 0.5917(14) 0.290(2) 0.043(3) Uani 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O 0.0070(6) 0.0060(5) 0.0090(9) 0.0013(7) 0.0024(6) -0.0001(5) Cl2 0.0039(3) 0.0074(4) 0.0075(5) 0.0025(4) 0.0021(3) 0.0014(3) Cl3 0.0082(4) 0.0048(3) 0.0066(5) 0.0019(4) 0.0025(4) 0.0031(3) Cl4 0.0063(3) 0.0055(3) 0.0067(5) 0.0017(4) 0.0013(3) -0.0002(3) Cl5 0.0050(3) 0.0079(4) 0.0081(5) 0.0019(4) 0.0018(4) 0.0016(3) Cl6 0.0070(3) 0.0057(3) 0.0086(5) 0.0027(4) 0.0014(4) 0.0022(3) C1 0.0043(4) 0.0051(5) 0.0058(7) 0.0016(6) 0.0023(5) 0.0003(4) C2 0.0043(4) 0.0047(4) 0.0061(7) 0.0015(6) 0.0019(5) 0.0006(3) C3 0.0052(4) 0.0042(4) 0.0039(6) 0.0015(5) 0.0017(4) 0.0014(3) C4 0.0043(4) 0.0041(4) 0.0054(7) 0.0017(5) 0.0019(5) 0.0008(3) C5 0.0042(4) 0.0055(4) 0.0053(6) 0.0029(6) 0.0027(5) 0.0014(4) C6 0.0044(4) 0.0054(4) 0.0055(7) 0.0025(6) 0.0025(5) 0.0011(4) N1' 0.0069(3) 0.0052(3) 0.0069(5) 0.0006(4) 0.0009(4) 0.0005(3) C2' 0.0063(5) 0.0056(5) 0.0040(6) 0.0006(5) 0.0009(5) 0.0013(4) C3' 0.0079(5) 0.0056(5) 0.0078(7) -0.0001(6) 0.0015(5) 0.0005(4) C4' 0.0077(5) 0.0081(5) 0.0071(7) 0.0019(6) 0.0022(5) 0.0019(4) C5' 0.0088(6) 0.0097(6) 0.0086(8) 0.0014(7) 0.0036(6) 0.0024(5) C6' 0.0074(5) 0.0079(5) 0.0098(8) 0.0009(7) 0.0015(6) 0.0009(4) C7' 0.0084(5) 0.0094(6) 0.0095(8) 0.0035(7) 0.0051(6) 0.0012(5) H 0.0193(19) 0.0168(17) 0.027(3) 0.008(2) 0.007(2) 0.0044(15) H3' 0.023(2) 0.0181(19) 0.028(3) 0.003(2) 0.013(2) -0.0044(16) H4' 0.029(3) 0.024(2) 0.019(3) 0.000(3) 0.006(2) 0.006(2) H5' 0.025(3) 0.028(3) 0.027(3) 0.011(3) 0.015(3) 0.004(2) H6' 0.024(2) 0.0143(17) 0.030(3) -0.001(2) 0.007(2) -0.0042(15) H71' 0.047(5) 0.026(3) 0.059(7) 0.014(5) 0.025(5) 0.013(3) H72' 0.029(3) 0.043(4) 0.013(2) 0.003(3) 0.009(2) -0.007(3) H73' 0.023(3) 0.072(7) 0.045(5) 0.028(6) 0.014(3) 0.024(4) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag O C1 1.319(3) . ? O H 1.069(7) . ? Cl2 C2 1.717(2) . ? Cl3 C3 1.713(2) . ? Cl4 C4 1.710(2) . ? Cl5 C5 1.720(2) . ? Cl6 C6 1.721(2) . ? C1 C2 1.405(3) . ? C1 C6 1.406(3) . ? C2 C3 1.394(3) . ? C3 C4 1.396(3) . ? C4 C5 1.396(3) . ? C5 C6 1.385(3) . ? N1' C6' 1.338(4) . ? N1' C2' 1.340(3) . ? N1' H 1.535(7) . ? C2' C3' 1.392(3) . ? C2' C7' 1.503(4) . ? C3' C4' 1.390(4) . ? C3' H3' 1.081(7) . ? C4' C5' 1.393(3) . ? C4' H4' 1.082(7) . ? C5' C6' 1.380(4) . ? C5' H5' 1.084(10) . ? C6' H6' 1.079(6) . ? C7' H71' 1.075(11) . ? C7' H72' 1.091(7) . ? C7' H73' 1.068(8) . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C1 O H 116.9(5) . . ? O C1 C2 118.90(18) . . ? O C1 C6 123.66(19) . . ? C2 C1 C6 117.40(16) . . ? C3 C2 C1 121.44(16) . . ? C3 C2 Cl2 119.99(15) . . ? C1 C2 Cl2 118.56(14) . . ? C2 C3 C4 119.90(16) . . ? C2 C3 Cl3 119.58(15) . . ? C4 C3 Cl3 120.52(15) . . ? C3 C4 C5 119.50(16) . . ? C3 C4 Cl4 120.20(14) . . ? C5 C4 Cl4 120.28(14) . . ? C6 C5 C4 120.15(16) . . ? C6 C5 Cl5 120.13(15) . . ? C4 C5 Cl5 119.72(15) . . ? C5 C6 C1 121.60(17) . . ? C5 C6 Cl6 120.20(15) . . ? C1 C6 Cl6 118.10(15) . . ? C6' N1' C2' 119.37(18) . . ? C6' N1' H 119.9(3) . . ? C2' N1' H 120.3(3) . . ? N1' C2' C3' 121.0(2) . . ? N1' C2' C7' 117.08(18) . . ? C3' C2' C7' 121.9(2) . . ? C4' C3' C2' 119.4(2) . . ? C4' C3' H3' 121.7(5) . . ? C2' C3' H3' 118.8(5) . . ? C3' C4' C5' 119.1(2) . . ? C3' C4' H4' 120.9(6) . . ? C5' C4' H4' 120.0(6) . . ? C6' C5' C4' 117.9(3) . . ? C6' C5' H5' 121.5(5) . . ? C4' C5' H5' 120.6(5) . . ? N1' C6' C5' 123.2(2) . . ? N1' C6' H6' 115.2(6) . . ? C5' C6' H6' 121.5(6) . . ? C2' C7' H71' 111.5(7) . . ? C2' C7' H72' 111.9(5) . . ? H71' C7' H72' 107.6(10) . . ? C2' C7' H73' 111.3(8) . . ? H71' C7' H73' 105.4(10) . . ? H72' C7' H73' 108.9(9) . . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag O C1 C2 C3 -179.3(3) . . . . ? C6 C1 C2 C3 -1.4(4) . . . . ? O C1 C2 Cl2 1.7(4) . . . . ? C6 C1 C2 Cl2 179.7(2) . . . . ? C1 C2 C3 C4 0.6(4) . . . . ? Cl2 C2 C3 C4 179.5(2) . . . . ? C1 C2 C3 Cl3 179.7(2) . . . . ? Cl2 C2 C3 Cl3 -1.4(3) . . . . ? C2 C3 C4 C5 0.7(4) . . . . ? Cl3 C3 C4 C5 -178.4(2) . . . . ? C2 C3 C4 Cl4 179.3(2) . . . . ? Cl3 C3 C4 Cl4 0.2(3) . . . . ? C3 C4 C5 C6 -1.2(4) . . . . ? Cl4 C4 C5 C6 -179.8(2) . . . . ? C3 C4 C5 Cl5 179.6(2) . . . . ? Cl4 C4 C5 Cl5 1.0(3) . . . . ? C4 C5 C6 C1 0.5(4) . . . . ? Cl5 C5 C6 C1 179.7(2) . . . . ? C4 C5 C6 Cl6 176.7(2) . . . . ? Cl5 C5 C6 Cl6 -4.1(4) . . . . ? O C1 C6 C5 178.7(3) . . . . ? C2 C1 C6 C5 0.8(4) . . . . ? O C1 C6 Cl6 2.4(4) . . . . ? C2 C1 C6 Cl6 -175.5(2) . . . . ? C6' N1' C2' C3' 0.2(3) . . . . ? C6' N1' C2' C7' -179.72(19) . . . . ? N1' C2' C3' C4' 0.6(3) . . . . ? C7' C2' C3' C4' -179.5(2) . . . . ? C2' C3' C4' C5' -1.4(3) . . . . ? C3' C4' C5' C6' 1.4(3) . . . . ? C2' N1' C6' C5' -0.1(3) . . . . ? C4' C5' C6' N1' -0.7(3) . . . . ? _diffrn_measured_fraction_theta_max 0.085 _diffrn_reflns_theta_full 66.67 _diffrn_measured_fraction_theta_full 0.085 _refine_diff_density_max 3.472 _refine_diff_density_min -3.094 _refine_diff_density_rms 0.638