MassIVE MSV000088191

Partial Private

SWATH-MS analysis of cattle plasma proteome


Description

This dataset includes files relevant to SWATH-MS analysis of cattle plasma proteome which are - SWATH-MS raw mass spec files (.wiff format) - Spectral library file (.blib skyline format) - Quantification results files (9 skyline files corresponding to 9 timepoints from experiment) [doi:10.25345/C5JR9G] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: SWATH-MS, Cattle plasma proteome

Contact

Principal Investigators:
(in alphabetical order)
Prof Paul Mills, The University Of Queensland, Australia
Submitting User: pdghodasara
Number of Files: 311
Total Size: 160.09 GB
Subscribers: 1
 
Owner Reanalyses
Identification Results
    Proteins (Reported):
N/A N/A
    Peptides:
N/A N/A
    Variant Peptides:
N/A N/A
    PSMs:
N/A N/A
 
Browse Dataset Files
 
FTP Download Link (click to copy):
Note: The above URL is valid only while this dataset is still private. After publication, the permanent URL to the dataset will be:

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Click here to queue conversion of this dataset's submitted spectrum files to open formats (e.g. mzML). This process may take some time.

When complete, the converted files will be available in the "ccms_peak" subdirectory of the dataset's FTP space (accessible via the "FTP Download" link to the right).
Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.