# Supplementary Material (ESI) for Dalton Transactions # This journal is (c) The Royal Society of Chemistry 2010 data_global _journal_name_full 'Dalton Trans.' _journal_coden_Cambridge 0222 _publ_contact_author_name 'Chand, Dillip' _publ_contact_author_email dillip@iitm.ac.in, _publ_section_title ; Conformation of N,N'-bis(3-pyridylformyl)piperazine and spontaneous formation of a saturated quadruple stranded metallohelicate ; _publ_author_name 'Dillip Chand' # Attachment '- helicateRevised.txt' #=========================================================================== data_tetra _database_code_depnum_ccdc_archive 'CCDC 745870' #TrackingRef '- helicateRevised.txt' _audit_creation_method SHELXL-97 _chemical_name_systematic ; ? ; _chemical_name_common ? _chemical_melting_point ? _chemical_formula_moiety ? _chemical_formula_sum 'C64 H96 N20 O48 Pd2' _chemical_formula_weight 2126.41 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting Tetragonal _symmetry_space_group_name_H-M P4/n loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y+1/2, z' '-y+1/2, x, z' 'y, -x+1/2, z' '-x, -y, -z' 'x-1/2, y-1/2, -z' 'y-1/2, -x, -z' '-y, x-1/2, -z' _cell_length_a 17.0336(7) _cell_length_b 17.0336(7) _cell_length_c 17.5784(9) _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_volume 5100.3(4) _cell_formula_units_Z 2 _cell_measurement_temperature 293(2) _cell_measurement_reflns_used ? _cell_measurement_theta_min ? _cell_measurement_theta_max ? _exptl_crystal_description blocks _exptl_crystal_colour yellow _exptl_crystal_size_max 0.32 _exptl_crystal_size_mid 0.26 _exptl_crystal_size_min 0.22 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.385 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 2192 _exptl_absorpt_coefficient_mu 0.450 _exptl_absorpt_correction_type Multi-Scan _exptl_absorpt_correction_T_min 0.871 _exptl_absorpt_correction_T_max 0.908 _exptl_absorpt_process_details SADABS _exptl_special_details ; ? ; _diffrn_ambient_temperature 293(2) _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type ? _diffrn_measurement_method ? _diffrn_detector_area_resol_mean ? _diffrn_standards_number ? _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% ? _diffrn_reflns_number 60629 _diffrn_reflns_av_R_equivalents 0.1112 _diffrn_reflns_av_sigmaI/netI 0.0897 _diffrn_reflns_limit_h_min -17 _diffrn_reflns_limit_h_max 22 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_k_max 22 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_theta_min 2.05 _diffrn_reflns_theta_max 28.35 _reflns_number_total 6354 _reflns_number_gt 3006 _reflns_threshold_expression >2sigma(I) _computing_data_collection ? _computing_cell_refinement ? _computing_data_reduction ? _computing_structure_solution ? _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_molecular_graphics ? _computing_publication_material ? _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The hydrogen atoms of the water molecules could neither be added at calculated positions nor be located from FMAP. The very large ellipsoids for O9 and O13 could be explained by a disorder on the position. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1303P)^2^+19.5464P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment constr _refine_ls_extinction_method SHELXL _refine_ls_extinction_coef 0.0043(8) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_number_reflns 6354 _refine_ls_number_parameters 296 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.1870 _refine_ls_R_factor_gt 0.0844 _refine_ls_wR_factor_ref 0.2345 _refine_ls_wR_factor_gt 0.2131 _refine_ls_goodness_of_fit_ref 0.998 _refine_ls_restrained_S_all 0.998 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.015 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Pd1 Pd 0.2500 0.2500 1.10172(6) 0.0475(4) Uani 1 4 d S . . Pd2 Pd 0.2500 0.2500 0.56446(6) 0.0521(4) Uani 1 4 d S . . O1 O 0.4144(5) 0.5171(6) 0.7380(4) 0.130(3) Uani 1 1 d . . . O2 O 0.0581(5) 0.4932(7) 0.9223(5) 0.140(4) Uani 1 1 d . . . O3 O 0.2500 0.2500 0.8949(9) 0.144(7) Uani 1 4 d S . . O4 O 0.2500 0.2500 0.7653(12) 0.199(11) Uani 1 4 d S . . O5 O 0.2500 0.2500 0.3945(8) 0.121(6) Uani 1 4 d S . . O6 O 0.2500 0.2500 0.2738(7) 0.117(5) Uani 1 4 d S . . O7 O 0.5433(6) 0.4985(8) 0.6511(6) 0.171(4) Uani 1 1 d . . . O8 O 0.1330(7) 0.5216(10) 0.5665(8) 0.198(6) Uani 1 1 d . . . O9 O 0.218(2) 0.590(6) 0.321(4) 1.08(9) Uani 1 1 d . . . O10 O 0.3245(9) 0.4883(13) 0.2643(11) 0.274(9) Uani 1 1 d . . . O11 O 0.1925(17) 0.652(2) 0.577(2) 0.47(2) Uani 1 1 d . . . O12 O 0.5258(10) 0.6404(11) 0.5835(10) 0.235(7) Uani 1 1 d . . . O13 O 0.1498(15) 0.7201(19) 0.946(2) 0.44(2) Uani 1 1 d . . . O14 O 0.0126(7) 0.6599(6) 0.9028(8) 0.168(4) Uani 1 1 d . . . N1 N 0.2882(4) 0.3625(4) 0.5683(3) 0.0567(15) Uani 1 1 d . . . N2 N 0.1976(3) 0.3559(3) 1.0970(3) 0.0504(14) Uani 1 1 d . . . N3 N 0.1817(5) 0.4919(7) 0.8882(5) 0.113(3) Uani 1 1 d . . . N4 N 0.2920(5) 0.5052(6) 0.7719(5) 0.105(3) Uani 1 1 d . . . N5 N 0.2500 0.2500 0.8303(8) 0.059(3) Uani 1 4 d S . . N6 N 0.2500 0.2500 0.3343(11) 0.169(12) Uani 1 4 d S . . C1 C 0.3027(5) 0.4045(5) 0.5053(4) 0.069(2) Uani 1 1 d . . . H1 H 0.2935 0.3824 0.4578 0.083 Uiso 1 1 calc R . . C2 C 0.3307(6) 0.4791(6) 0.5102(5) 0.086(3) Uani 1 1 d . . . H2 H 0.3399 0.5076 0.4660 0.104 Uiso 1 1 calc R . . C3 C 0.3455(6) 0.5127(6) 0.5795(6) 0.085(3) Uani 1 1 d . . . H3 H 0.3672 0.5627 0.5826 0.102 Uiso 1 1 calc R . . C4 C 0.3278(5) 0.4715(5) 0.6442(4) 0.065(2) Uani 1 1 d . . . C5 C 0.3001(4) 0.3955(5) 0.6371(4) 0.0619(19) Uani 1 1 d . . . H5 H 0.2895 0.3665 0.6807 0.074 Uiso 1 1 calc R . . C6 C 0.3469(6) 0.5007(6) 0.7231(6) 0.086(3) Uani 1 1 d . . . C7 C 0.3119(8) 0.5248(12) 0.8505(7) 0.150(7) Uani 1 1 d . . . H7A H 0.3669 0.5131 0.8595 0.180 Uiso 1 1 calc R . . H7B H 0.3043 0.5807 0.8585 0.180 Uiso 1 1 calc R . . C8 C 0.2669(8) 0.4839(11) 0.9009(7) 0.151(7) Uani 1 1 d . . . H8A H 0.2791 0.5018 0.9519 0.181 Uiso 1 1 calc R . . H8B H 0.2808 0.4288 0.8978 0.181 Uiso 1 1 calc R . . C9 C 0.1601(8) 0.5030(18) 0.8063(9) 0.238(14) Uani 1 1 d . . . H9A H 0.1154 0.4694 0.7960 0.286 Uiso 1 1 calc R . . H9B H 0.1422 0.5568 0.8005 0.286 Uiso 1 1 calc R . . C10 C 0.2065(7) 0.4915(13) 0.7584(8) 0.167(8) Uani 1 1 d . . . H10A H 0.1915 0.5234 0.7151 0.200 Uiso 1 1 calc R . . H10B H 0.2007 0.4371 0.7430 0.200 Uiso 1 1 calc R . . C11 C 0.1261(6) 0.4839(6) 0.9379(6) 0.083(3) Uani 1 1 d . . . C12 C 0.1472(4) 0.4576(5) 1.0170(5) 0.0612(19) Uani 1 1 d . . . C13 C 0.1822(4) 0.3870(4) 1.0276(4) 0.0564(18) Uani 1 1 d . . . H13 H 0.1965 0.3582 0.9848 0.068 Uiso 1 1 calc R . . C14 C 0.1777(5) 0.3982(5) 1.1583(4) 0.066(2) Uani 1 1 d . . . H14 H 0.1892 0.3787 1.2065 0.080 Uiso 1 1 calc R . . C15 C 0.1409(6) 0.4693(6) 1.1517(6) 0.086(3) Uani 1 1 d . . . H15 H 0.1262 0.4971 1.1949 0.103 Uiso 1 1 calc R . . C16 C 0.1259(6) 0.4992(6) 1.0804(6) 0.081(3) Uani 1 1 d . . . H16 H 0.1014 0.5477 1.0752 0.097 Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pd1 0.0522(5) 0.0522(5) 0.0383(6) 0.000 0.000 0.000 Pd2 0.0589(5) 0.0589(5) 0.0384(6) 0.000 0.000 0.000 O1 0.094(5) 0.203(9) 0.093(5) -0.043(6) -0.003(4) -0.057(6) O2 0.079(5) 0.245(12) 0.097(6) 0.056(6) 0.006(4) 0.048(6) O3 0.185(13) 0.185(13) 0.063(11) 0.000 0.000 0.000 O4 0.260(19) 0.260(19) 0.077(14) 0.000 0.000 0.000 O5 0.157(10) 0.157(10) 0.049(8) 0.000 0.000 0.000 O6 0.155(9) 0.155(9) 0.041(8) 0.000 0.000 0.000 O7 0.136(8) 0.243(13) 0.135(9) -0.006(8) 0.029(6) -0.001(8) O8 0.143(10) 0.267(16) 0.183(12) 0.019(10) -0.013(8) 0.033(10) O9 0.24(3) 2.0(2) 1.00(12) -1.00(14) -0.11(5) 0.22(7) O10 0.194(14) 0.37(2) 0.257(19) -0.111(18) -0.030(13) 0.002(14) O11 0.31(3) 0.37(4) 0.72(7) -0.05(4) -0.07(3) 0.03(3) O12 0.242(17) 0.227(16) 0.235(17) 0.059(13) 0.048(13) -0.018(13) O13 0.25(2) 0.44(4) 0.64(6) -0.19(4) -0.03(3) -0.07(2) O14 0.144(9) 0.120(8) 0.240(14) -0.006(8) -0.009(8) 0.024(6) N1 0.065(4) 0.063(4) 0.042(3) 0.000(3) 0.000(3) 0.001(3) N2 0.053(3) 0.053(3) 0.045(3) -0.004(2) 0.002(2) -0.002(3) N3 0.077(6) 0.187(10) 0.075(5) 0.054(6) -0.006(4) -0.010(6) N4 0.073(5) 0.171(9) 0.069(5) -0.045(6) -0.006(4) -0.012(5) N5 0.065(5) 0.065(5) 0.046(7) 0.000 0.000 0.000 N6 0.24(2) 0.24(2) 0.030(10) 0.000 0.000 0.000 C1 0.089(6) 0.075(6) 0.043(4) 0.009(4) 0.006(4) -0.008(4) C2 0.123(8) 0.075(6) 0.061(5) 0.017(5) 0.019(5) -0.015(6) C3 0.106(8) 0.065(6) 0.084(7) 0.008(5) 0.008(6) -0.017(5) C4 0.076(5) 0.069(5) 0.052(4) -0.006(4) 0.001(4) -0.012(4) C5 0.062(5) 0.073(5) 0.050(4) -0.001(4) 0.000(3) -0.006(4) C6 0.086(7) 0.101(7) 0.070(6) -0.028(5) -0.005(5) -0.028(6) C7 0.101(9) 0.27(2) 0.075(8) -0.062(10) -0.011(7) -0.029(11) C8 0.098(9) 0.28(2) 0.077(8) 0.068(10) -0.047(7) -0.061(11) C9 0.077(9) 0.55(4) 0.092(10) 0.138(17) -0.011(8) -0.011(16) C10 0.072(8) 0.34(2) 0.086(9) -0.075(12) -0.010(6) 0.023(11) C11 0.063(6) 0.104(8) 0.081(6) 0.021(5) -0.006(5) 0.022(5) C12 0.055(4) 0.064(5) 0.065(5) 0.000(4) 0.003(4) 0.013(4) C13 0.059(4) 0.063(5) 0.047(4) -0.002(3) 0.004(3) 0.009(4) C14 0.077(5) 0.072(5) 0.050(4) -0.009(4) 0.007(4) 0.010(4) C15 0.101(7) 0.084(7) 0.074(6) -0.030(5) 0.011(5) 0.020(6) C16 0.081(6) 0.063(5) 0.098(7) -0.007(5) 0.008(5) 0.023(5) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Pd1 N2 2.014(6) 3 ? Pd1 N2 2.014(6) . ? Pd1 N2 2.014(6) 2 ? Pd1 N2 2.014(6) 4 ? Pd2 N1 2.024(6) 3 ? Pd2 N1 2.024(6) . ? Pd2 N1 2.024(6) 2 ? Pd2 N1 2.024(6) 4 ? O1 C6 1.212(11) . ? O2 C11 1.201(11) . ? O3 N5 1.137(18) . ? O4 N5 1.14(2) . ? O5 N6 1.06(2) . ? O6 N6 1.06(2) . ? N1 C1 1.342(9) . ? N1 C5 1.349(9) . ? N2 C14 1.339(9) . ? N2 C13 1.355(9) . ? N3 C11 1.296(12) . ? N3 C9 1.498(15) . ? N3 C8 1.474(15) . ? N4 C6 1.272(12) . ? N4 C7 1.460(13) . ? N4 C10 1.494(15) . ? C1 C2 1.361(12) . ? C2 C3 1.369(13) . ? C3 C4 1.371(12) . ? C4 C5 1.384(11) . ? C4 C6 1.509(12) . ? C7 C8 1.363(18) . ? C9 C10 1.170(18) . ? C11 C12 1.505(12) . ? C12 C13 1.356(10) . ? C12 C16 1.369(12) . ? C14 C15 1.369(13) . ? C15 C16 1.378(13) . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag N2 Pd1 N2 89.903(14) 3 . ? N2 Pd1 N2 89.903(14) 3 2 ? N2 Pd1 N2 175.3(3) . 2 ? N2 Pd1 N2 175.3(3) 3 4 ? N2 Pd1 N2 89.903(15) . 4 ? N2 Pd1 N2 89.903(14) 2 4 ? N1 Pd2 N1 89.935(11) 3 . ? N1 Pd2 N1 89.935(12) 3 2 ? N1 Pd2 N1 176.2(3) . 2 ? N1 Pd2 N1 176.2(3) 3 4 ? N1 Pd2 N1 89.935(12) . 4 ? N1 Pd2 N1 89.935(11) 2 4 ? C1 N1 C5 119.4(7) . . ? C1 N1 Pd2 122.4(5) . . ? C5 N1 Pd2 118.2(5) . . ? C14 N2 C13 117.7(6) . . ? C14 N2 Pd1 124.1(5) . . ? C13 N2 Pd1 118.2(5) . . ? C11 N3 C9 118.8(9) . . ? C11 N3 C8 127.4(9) . . ? C9 N3 C8 113.5(9) . . ? C6 N4 C7 118.7(9) . . ? C6 N4 C10 126.9(9) . . ? C7 N4 C10 114.4(9) . . ? O4 N5 O3 180.000(9) . . ? O6 N6 O5 180.000(4) . . ? N1 C1 C2 120.7(8) . . ? C1 C2 C3 120.8(8) . . ? C4 C3 C2 118.9(9) . . ? C3 C4 C5 118.7(8) . . ? C3 C4 C6 123.1(8) . . ? C5 C4 C6 117.8(8) . . ? N1 C5 C4 121.5(7) . . ? O1 C6 N4 122.6(9) . . ? O1 C6 C4 118.6(9) . . ? N4 C6 C4 118.8(9) . . ? C8 C7 N4 111.5(12) . . ? C7 C8 N3 114.1(11) . . ? C10 C9 N3 120.2(14) . . ? C9 C10 N4 121.1(13) . . ? O2 C11 N3 122.5(9) . . ? O2 C11 C12 118.7(9) . . ? N3 C11 C12 118.7(8) . . ? C13 C12 C16 117.7(8) . . ? C13 C12 C11 119.7(7) . . ? C16 C12 C11 122.3(8) . . ? C12 C13 N2 123.7(7) . . ? N2 C14 C15 121.6(8) . . ? C14 C15 C16 119.3(8) . . ? C12 C16 C15 120.0(8) . . ? _diffrn_measured_fraction_theta_max 0.995 _diffrn_reflns_theta_full 28.35 _diffrn_measured_fraction_theta_full 0.995 _refine_diff_density_max 1.155 _refine_diff_density_min -0.870 _refine_diff_density_rms 0.141